PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G076100.1
Common NamePOPTR_0014s07220g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 649aa    MW: 72309.7 Da    PI: 4.2666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G076100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-28171392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +Gf+F+P+deel+ +yL +k++g+ +e    ++ v+++++ePwdLp k  +k  ++  wyf ++rd +   gk ++r+tk+gyWk t ++
  Potri.014G076100.1  17 EQGFKFDPSDEELIRKYLVPKTRGDIMEG-LPMAVVNLCEHEPWDLPgKsIIKLtGQVAWYFLCPRDLR---GKVHRRKTKAGYWKPTSQQ 103
                         68***********************9988.569**************644333324559******9985...7789999************ PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+++++ +++++g+ +tL fy    +k ++t W++ e+ l
  Potri.014G076100.1 104 KSITAEhTNKKIGVVRTLRFY----EKQVRTGWMIYEFDL 139
                         ****9877888**********....45679*******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3113158IPR003441NAC domain
PROSITE profilePS5100535.58516159IPR003441NAC domain
PfamPF023651.2E-1918139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MDDYFSSVLP ILLLLMEQGF KFDPSDEELI RKYLVPKTRG DIMEGLPMAV VNLCEHEPWD  60
LPGKSIIKLT GQVAWYFLCP RDLRGKVHRR KTKAGYWKPT SQQKSITAEH TNKKIGVVRT  120
LRFYEKQVRT GWMIYEFDLI AESSQFKKGQ FVLCKLEFDS KGEKSKKGEQ SHHIAPVSHS  180
EVEPSQSMDS DSENINPSEM AMRYSPCDES ELSHHAGSHF GNQNPSELMN NSARQLSELS  240
HHMASDSENN LMPNLVYDGS GSSHSTVFNC EDLYWNQPTV DSAYNGSESL YMAFDSENQN  300
PNELPTVDNS ASNVSKNHGM AFGLANHNPN VSLTVDNSTS NVSESHHMAL VLENQNLNNS  360
ISILTCENSL MASRGLENQE PFFPPCSLIN QSTYDKSESS SLMDFDFENQ NLVKEFDISA  420
FCEGVWSNTT ATPPDFGNQN PCKKTDMSTL EEGYSSYFNS SSSDNDLADV ALPEQVSPGL  480
QAEIEGCFEQ ENIPNPALVQ LPAYMEESHS FRGFGTLENQ EPFFPPCSFI NQSTYDKSES  540
SSLMNFDFGN QNLVKEFDIS AFGEGVWSNT TATPPDFGNQ NPCKKTDMST LEEGYSSYFN  600
SSSSDNDLAD VALPEQVSPG PQAEIEGCFE QENIPNPALV QLPFLGFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-191015611162NO APICAL MERISTEM PROTEIN
1ut4_B2e-191015611162NO APICAL MERISTEM PROTEIN
1ut7_A2e-191015611162NO APICAL MERISTEM PROTEIN
1ut7_B2e-191015611162NO APICAL MERISTEM PROTEIN
3swm_A2e-191015614165NAC domain-containing protein 19
3swm_B2e-191015614165NAC domain-containing protein 19
3swm_C2e-191015614165NAC domain-containing protein 19
3swm_D2e-191015614165NAC domain-containing protein 19
3swp_A2e-191015614165NAC domain-containing protein 19
3swp_B2e-191015614165NAC domain-containing protein 19
3swp_C2e-191015614165NAC domain-containing protein 19
3swp_D2e-191015614165NAC domain-containing protein 19
4dul_A2e-191015611162NAC domain-containing protein 19
4dul_B2e-191015611162NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826738e-33AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320761.20.0hypothetical protein POPTR_0014s07220g
TrEMBLB9IC660.0B9IC66_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1900836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-26NAC domain containing protein 71